What we know about the Omicron variant

With so many things about the Omicron variant still uncertain, I’m happy to find a bit of (apparently) solid news about it: five key symptoms. 

They’re not the same as the earlier variants’ symptoms. They’re extreme tiredness, night sweats, a scratchy (as opposed to sore) throat, a dry cough, and mild muscle aches. Officially, though, UK government websites are sticking to the old three: a high fever, a new continuous cough, and changes to your sense of taste or smell. 

So is Omicron milder? Possibly. Hopefully. The World Health Organization–a.k.a. WHO–thinks it is. Probably.

But what the hell, we don’t know yet, and Moderna’s chief medical officer, Dr Paul Burton, said it “poses a real threat.” He’s not convinced that it’s milder. With Covid, severe disease waddles in a couple of weeks behind infection, and South African reports that it’s mild may have to do with specific conditions there.

Burton says Omicron and Delta are likely to circulate together for some time. So if you’re reaching for your seatbelt buckle, thinking you could unsnap the beast because you won’t be needing it, you might want to wait a while. Nothing’s certain yet.

 

Irrelevant photo: Flowers from last summer’s village produce stall.

Could somebody give us a bit of good news, please?

Well, yes, although it’s not ready for use yet. Scientists at Aarhus University (that’s in Denmark, and I had to look it up too) have discovered a molecule that covers the nasty little spikes on the Covid virus, which then keeps it from entering human cells, spreading infection, and throwing those loud and drunken parties that have made the last couple of years so difficult for us all.

It’s not a vaccine but it uses some of the same building blocks that the mRNA vaccines do. No, don’t ask me. Just nod and look wise and someone will think you know what that means. 

One of the implications of this is that it’ll be cheaper and easier to make than the antibody treatments that are now used to fight the most serious Covid cases. 

It can also be used to detect the virus. And make coffee.

No idea. Just nod and look wise.

It’s done well on detecting the Delta variant, but it’s too early to have data on how it does with the Omicron.

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It sounds like a new antiviral drug is in the pipeline, although it also sounds like it’s in the early stages. The article I got this from–let’s say the language could stand to be more considerate to your average blogging idiot. I think we’re talking about a pill–the article says it’s “orally available,” but then, so’s my tongue–and (unlike my tongue) it would only need to be taken once a day. 

Other information? It works against Covid and other respiratory RNA viruses–at least in animal models. It’s not coming off the assembly line yet, but it’s something to keep our eye on.

If it comes through, it will join the Pfizer and Merck antivirals that are a few steps ahead, approved in some places, and seeking approval in others. They can be used to treat mild to moderate Covid and keep it from progressing–or, basically, from killing you. Or landing you in the hospital. 

 

Spotting Omicron

Different countries use different tests for Covid, and one of them happens to be good at spotting the Omicron variant. Among other things, that means that information about the variant will be coming in at different rates from different countries.

 

Going beyond neutralizing antibodies

Early studies of the new variant have reported on how well prepared our neutralizing antibodies are to win a debate with it, and neutralizing antibodies are the focus because they’re easy to measure, but they’re not the only tool our immune systems have on hand. When it loses a debate, it can always fall back on a different, time-tested tactic: throwing chairs.

Okay, very small, metaphorical chairs. 

The body’s second line of defense is made up of binding antibodies, T cells, and memory B cells. They’ve got short tempers and long memories, and when they’re not actively fighting Covid they lift weights and make threatening noises. 

When they’re working, though, they target a different part of the virus than the neutralizing antibodies do–and in the Omicron variant it’s not as heavily mutated a part. 

So if you’ve had a booster shot, you’re not totally unprepared to fight this thing. This is, admittedly, early news, and more studies are needed before we’ll know how well they aim those chairs. 

 

Spreading Covid in the House of Commons

As Britain’s Conservative Party shakes itself apart over how to respond to the new variant, we’re being treated to scenes that make the House of Commons look like a Rubens painting. 

In case you’re lucky enough to have missed Rubens, he liked to paint his people in piles, sometimes adding an unexplained cow to the mob. (Apologies: The link won’t take you to the painting with the cow. I swear I saw it one–it’s not something my imagination’s capable of coming up with–but I reached my limit before I found it.)

Why is that a good parallel to the House of Commons? Earlier in the pandemic, MPs were allowed to basically phone in, working from home and voting safely from a distance. I don’t know if they were able to debate from home, but then no one listens to anyone else anyway, so what did it matter?

Cynical? Not me.

That ended, in spite of protests, and MPs now have to gather in absurdly small rooms to vote. As an MP from the Scottish National Party put it, “The only way to pass regulations to try and get Omicron Covid back under control will be for about 400 people to pack into a room big enough for 100 to record their votes.

“They’ll do this up to four times in succession. In between, they won’t be able to go too far so will pack out the lobbies at either end of the chamber waiting for the next vote to be called.

“Several MPs have tested positive for Covid in the last few days so there’s a very high probability that others are carrying the virus but have not yet shown symptoms or given a positive test. What could possibly go wrong?”

The future of Covid, and some updates on the fight against it

A while back, I summarized a theory that the Covid virus is unlikely to pick up the number of mutations it would need if it’s going to evade the vaccines. I felt a lot better after reading that, but let’s look at an opposing theory so we can all get depressed together.

This theory raises the possibility that in addition to the virus picking up small mutations over time (that’s called antigenic drift), there’s the possibility of antigenic shift, which involves more dramatic changes caused by the virus recombining with other human coronaviruses. Viruses do that. Basically, they hold a swap meet. Or a bring and buy sale if you’re more used to them. They don’t actually use money–their evolution hasn’t brought them to that exalted stage–but they do trade strategies for making money-using creatures sick.

If they swap the right bits of knowledge, the current crop of vaccines will need to be re-engineered. We’ll all move back to Go and start the game over again.

It’s also possible that Covid will infect animals we share space with and then cross back to humans in some more powerful form. That’s reverse zoonosis.

Irrelevant photo: Japanese anemone, with a bite out of it. That’s to prove the beauty of imperfection and all that deep philosophical stuff.

As a general rule, long-term evolution favors viruses that don’t make their hosts too sick. The very sick tend to crawl away somewhere and keep their germs to themselves, which (seeing this from the germs’ point of view) isn’t an efficient use of a host. And the dead die, which also limits their opportunities to share. That’s even more inefficient. 

From that base, any number of people argue that (after a trail of death and destruction) epidemic diseases get milder over time. Everyone who doesn’t die lives happily ever after. They point to the 1918 flu epidemic (or the Black Death, or some other cheery moment in human history) and assure us that this is the natural order of things. 

According to this theory, that is indeed one possibility but it’s not the only one. 

The British government’s group of scientific advisors, SAGE, thinks the virus isn’t likely to become less virulent in the short term. (Virulence isn’t about a disease’s ability to spread–that’s transmissibility. It’s about how sick it makes a person.) SAGE considers that a long-term possibility, but it also considers it a realistic possibility that a more virulent strain will emerge. 

Sorry. I don’t create the possibilities, I just write about them.

So what direction will it evolve in? Basically, no one’s sure.  

However, all isn’t lost. A lot of work’s being done on how to cope with Covid.

 

The Covid-killing mask 

A group of researchers have created a surgical mask that deactivates not just the Covid virus but any enveloped virus (that includes the flu), plus some antibiotic-resistant bacteria like a couple of the staphylococci. 

What’s an enveloped virus? I’m so glad you asked, because I have an answer right here in my pocket. It’s “any virus in which a nucleoprotein core is surrounded by a lipoprotein envelope consisting of a closed bilayer of lipid derived from that of the host cell’s membrane(s), with glycoprotein.”

You’re welcome. I didn’t understand it either, but I’m glad to get it out of my pocket.

The masks are the first ones that don’t just protect both the rest of the world from the wearer but also protect the wearer from the rest of the world. 

Okay, not completely, but virus- and staphylococcuses-wise, it will. If someone’s trying to hit you on the head with a hammer, the masks are no help at all.

I’ve seen masks promoted as antiviral. Advertising copy for masks with a copper layer, for example, talks about copper’s antiviral properties without actually claiming that the masks will kill Covid. From what I’ve read, they don’t have enough copper to do more than provide carefully worded hype.

The new masks are called FFP Covid masks, they come in adult and child sizes, and according to the article I read they’re very affordable.

How affordable is very affordable? After bumping around the internet for a while, I found some on sale for one euro. That’s not bad, but whether it’s affordable depends on how much you have in your wallet, and how long it takes to renew itself once you pull some of it out to buy masks.

Not to mention how many other calls you have on it.

Are the masks reusable? That’ll affect people’s opinion of their affordability, and the definitive answer is, I’m not sure. They look disposable, but that’s strictly a guess. 

Another limiting factor for most of us–since this is an English-language site–is that the only place I could find them for sale is in Spain, which is where they were developed. Presumably they’ll make their way into the rest of the world at some point. 

Still, whatever the mask’s immediate impact, it’s an important step.

 

Quick updates

Multiple new Covid treatments and vaccines are in the works. Here’s a sampling:

An inhalable powder works against Covid, MERS, and one version of the flu. In animals. It has yet to be tried in  humans–at least in this form. As a pill, it’s used against leukemia, but when you turn it into a powder and inhale it, it becomes a whole ‘nother thing. In addition to landing in a different part of the body and possibly needing a different dose, it opens up the possibility of Covid treatment taking on some bad-boy chic: You roll up a hundred-dollar bill and snort your meds.  

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Repurposing a drug that’s already in use to treat a new disease isn’t, it turns out, as simple as it sounds. You may have to shift from a pill to a powder. You may need a dose so high that it turns toxic, at which point you may need to rethink the whole idea.

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Another drug that’s already in use, this one to treat fatty substances in the blood (no, don’t ask me), could reduce Covid infection by 70%. Could. So far, it’s worked only in human cells in the lab. Two clinical trials are underway, though.

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An antiviral called molnupiravir halves the chances of an infected, high-risk person needing hospitalization or dying from Covid, and Merck will be asking for emergency approval in the U.S. Molnupiravir doesn’t seem to be as effective as monoclonal antibodies, but because it’s a pill it can be used outside of hospital settings, so it’s much easier to use.. 

Down sides? It costs $700 for a five-day course of treatment, which makes it cheaper than and easier to type than monoclonal antibodies, but it’s still expensive. And some experts are warning about potential side effects. Plus it doesn’t seem to help patients who are already sick enough to be hospitalized. So although it’s gotten a lot of press coverage and is, without question, important, it’s not the answer to all problems.

Other antiviral pills are also in the works. 

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Vaccines? Why yes. A new vaccine in development uses only a single shot and can be stored at room temperature for up to a month. In trials with primates, it gave near-complete immunity that stayed at its peak level for eleven months.

It’s called an AAVCOVID vaccine, AAV being the vector the vaccine uses. 

What am I talking about? The vector’s the horse the vaccine rides in on. Or if you want to sound marginally more sensible, it’s the  strategy the developers use. I’m not going to try to explain this one, because I’m pretty sure I’ll get it wrong. Let’s just say that if this strategy works, it’ll help get the vaccine out to places where refrigeration’s a barrier. 

The team that’s developing it is also exploring needle-less delivery systems.

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Another vaccine in the works is using a new model that I’d love to explain but I’m not even close to understanding it, so let me quote: It combines “the advantages of the two types of traditional vaccines—virus-based vaccines and protein-based vaccines—by preparing a bacterial protein that self-assembles into a virus-like particle. By displaying a COVID-19 protein on the surface of this virus-like particle, researchers produced a novel vaccine that is well recognized by the mammalian immune system, but yet does not have any viral infectivity.”

If I understand that correctly, it behaves like one of those transformers kids used to play with, and for all I know still do. You introduce it into a body as a motorcycle, it clicks a few of its own pieces, turns green, and suddenly it’s the Hulk, chasing down unsuspecting Covid viruses.

Early tests show it being effective against the Covid variants and setting up a strong immune response.

Come to me anytime you need a high-grade scientific explanation.

 

Long Covid numbers

I’ve found some numbers on long Covid, finally: About a third of the people who come down with Covid get at least one long Covid  symptom. 

First question, who are we talking about when we say people who get Covid? As far as I can tell, it’s people who actually got sick, because the article talks about them recovering. So I think we can rule out anyone who gets infected but stays asymptomatic. 

We need all the good news we can get, so let’s play nice and say thanks for that.

Second question, how are they defining long Covid? You get to pick from nine core symptoms, and they have (or it has, if you only get one) to last at least 90 days. The most common ones are breathing problems, abdominal symptoms, fatigue, pain, and anxiety and depression.They’re more common in people who’ve been hospitalized and slightly more common in women than in men. The same symptoms occur after the flu, but they’re 1.5 times more common after Covid.

Next shred of good news? If long Covid symptoms are more common in people who’ve been hospitalized, less than a third of people with milder symptoms are likely to come down with it. 

How well are China’s vaccines working?

China is exporting two vaccines, and although they’re less effective than the gold standard vaccines like Pfizer and AstraZeneca, they do work. Sinopharm is 78% effective and Sinovac is somewhere between 50% and 78%. I’m not sure why the range is so large there. Sorry. And while I’m apologizing, apologies for not having a link on this. It’s from an email newsletter the New York Times sends out. It usually has links. Maybe I’m being particularly dense today.

There’ve been questions about the vaccines, especially after vaccinated people in the Seychelles became infected, but they do seem to be useful. In the Seychelles, when vaccinated people got Covid they had mild cases and recovered at home. It’s not what we’d all hope for, but it’s a lot better than being hospitalized. Or dying. China says it can make 5 billion doses a year. The U.S. has promised to donate 500 million doses of other vaccines (I don’t think they’ve specified which) to poorer countries. Britain has promised 100 million. 

The world’s population–since this is relevant to the discussion–is 7.6 billion. Or it was in 2019. I haven’t counted it since. I did try last month but I lost track somewhere around 5 billion and didn’t have the heart to start over. The vaccine rollout in poorer countries is beyond dismal. The vaccines are going to rich countries and poor ones just can’t get them.

So weigh 600 million against 5 billion, then weigh both of those against the number of countries that can’t get hold of any useful amount of vaccine and it makes the two Sino- vaccines appealing. 

Irrelevant photo: a rose

Not much is known yet about how well they protect against the variants. There seems to be some reduction against the Beta and Gamma variants, but that’s still not solidly established. 

China, having gotten off to a slow start in vaccinating its population, is now working at high speed. 

I had links for all that and have succeeded in losing them. Apologies.

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Early reports are that mixing vaccines–I think they were playing mix-and-match with the Pfizer and AstraZeneca, although the Moderna might have slipped in as well–may make them more effective, and Canada and a few European countries have started doing that. 

 

How times have changed

To boost the number of people getting vaccinated, Washington State is allowing marijuana retailers to offer a free joint to anyone who can show proof that they’ve had either their first shot or second shot. Or both at once. What the hell. If the stuff they’re offering is strong enough, who can count that high?

It also allows other businesses to offer a beer, a cocktail, or a glass of wine. Arizona and New Jersey have done similar things. Other states are running lotteries.

What are they up against in their effort to promote the vaccine? People who think getting vaccinated will cause keys to stick to their faces and forks to–

I stopped listening right about there, so I’m not sure where the forks stick. I’ve heard of food that sticks to your ribs, but we seem to have entered new territory here.  

Whether or not you’ve been vaccinated, plastic forks will not attack you. Covid restrictions allowing, you can go back to the food courts.

Antiviral drug update

If an antiviral drug that’s in late-stage testing works–and that’s not guaranteed–it could stop a Covid infection in its early stages. It could be available by the end of 2021–again, if it works.

With all those coulds in there, that sentence has a lot of wiggle room. Still, as everything we read lately says repeatedly, it could (there’s that word again) be a game changer. 

Cards? Jenga? A football team crashing through the front door and out the back?

The drug is one of several attempts to tackle Covid by treating the infection rather than vaccinating people, so let’s not bother to name this particular one and instead hope one of them comes through. Even the people weren’t cranking themselves up to be afraid of flying forks might accept this.

Or possibly not. It’s gotten so crazy out there that I’ve given up trying to predict where we’re headed.